* using log directory 'd:/Rcompile/CRANpkg/local64/2.11/IsoGene.Rcheck'
* using R version 2.11.1 Patched (2010-07-29 r52657)
* using session charset: ISO8859-1
* checking for file 'IsoGene/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'IsoGene' version '1.0-17'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'IsoGene' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking data for non-ASCII characters ... OK
* checking examples ... ERROR
Running examples in 'IsoGene-Ex.R' failed.
The error most likely occurred in:

> ### * IsoTestSAM
> 
> flush(stderr()); flush(stdout())
> 
> ### Name: IsoTestSAM
> ### Title: Obtaining the list of significant genes using the SAM procedure
> ### Aliases: IsoTestSAM
> ### Keywords: htest
> 
> ### ** Examples
> 
>   set.seed(1234)
>   x <- c(rep(1,3),rep(2,3),rep(3,3))
>   y1 <- matrix(rnorm(4500, 1,1),500,9) ## 500 genes with no trends
>   y2 <- matrix(c(rnorm(1500, 1,1),rnorm(1500,2,1),rnorm(1500,3,1)),500,9) ## 500 genes with increasing trends
>   y <- data.frame(rbind(y1, y2)) ##y needs to be a data frame
>   SAM.obj <- IsoTestSAM(x, y, fudge="pooled", niter=50, FDR=0.05, stat="E2") 
Error in `colnames<-`(`*tmp*`, value = c("Row.names", "t.stat", "q.val" : 
  attempt to set colnames on object with less than two dimensions
Calls: IsoTestSAM -> Isoqval -> colnames<-
Execution halted