* using log directory 'd:/Rcompile/CRANpkg/local64/2.11/SIS.Rcheck'
* using R version 2.11.1 Patched (2010-07-29 r52657)
* using session charset: ISO8859-1
* checking for file 'SIS/DESCRIPTION' ... OK
* this is package 'SIS' version '0.6'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'SIS' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking data for non-ASCII characters ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable use of $BLAS_LIBS ... OK
* checking examples ... ERROR
Running examples in 'SIS-Ex.R' failed.
The error most likely occurred in:

> ### * COXvanISISscad
> 
> flush(stderr()); flush(stdout())
> 
> ### Name: COXvanISISscad
> ### Title: (Iterative) Sure Independence Screening ((I)SIS) in the Cox
> ###   proportional hazards regression model
> ### Aliases: COXvanISISscad COXvarISISscad
> ### Keywords: file
> 
> ### ** Examples
> 
> set.seed(0)
> n=150
> p=200
> truerho=0.5
> beta <- c(4,4,4,-6*sqrt(2),4/3, rep(0,p-5))
> 
> corrmat=diag(rep(1-truerho, p))+matrix(truerho, p, p)
> corrmat[,4]=sqrt(truerho)
> corrmat[4, ]=sqrt(truerho)
> corrmat[4,4]=1
> corrmat[,5]=0
> corrmat[5,]=0
> corrmat[5,5]=1
> cholmat=chol(corrmat)
> 
> x=matrix(rnorm(p*n, mean=0, sd=1), n, p)
> x=x%*%cholmat
> 
> myrates <- exp(x%*%beta)
> 
> ytrue <- rexp(n, rate = myrates) 
> cen <- rexp(n, rate = 0.1 )
> time <- pmin(ytrue, cen)
> status <- as.numeric(ytrue <= cen)
> 
> cox.van.sis <- COXvanISISscad(x, time, status)
> p)
Error: unexpected ')' in "p)"
Execution halted