* using log directory 'd:/Rcompile/CRANpkg/local64/2.11/SNPMaP.Rcheck'
* using R version 2.11.1 Patched (2010-07-29 r52657)
* using session charset: ISO8859-1
* checking for file 'SNPMaP/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'SNPMaP' version '1.0.2'
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'SNPMaP' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... WARNING
checkRd: (5) SNPMaP-package.Rd:4-6: \title content must be plain text
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... WARNING
Codoc mismatches from documentation object 'SNPMaP-class':
\S4method{plot}{SNPMaP,missing}
  Code: function(x, FUN = function(x) { x}, xlim = c(loX, hiX), ylim =
                 c(0, hiY), xlab = "guess", ylab = "Density", main =
                 "", col = rainbow(length(x@chps)), legend.position =
                 "left", legend.bty = "n", lty = 1:length(x@chps),
                 zero.line = TRUE, ...)
  Docs: function(x, FUN = function(x) { x}, xlim = c(loX, hiX), ylim =
                 c(0, hiY), xlab = "guess", ylab = "Density", main =
                 x@table, col = rainbow(length(x@chps)),
                 legend.position = "left", legend.bty = "n", lty =
                 1:length(x@chps), zero.line = TRUE, ...)
  Mismatches in argument default values:
    Name: 'main' Code: "" Docs: x@table
\S4method{boxplot}{SNPMaP}
  Code: function(x, FUN = function(x) { x}, ylab = "guess", main = "",
                 ...)
  Docs: function(x, FUN = function(x) { x}, ylab = "guess", main =
                 x@table, ...)
  Mismatches in argument default values:
    Name: 'main' Code: "" Docs: x@table

* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking examples ... OK
* checking PDF version of manual ... OK