* using log directory 'd:/Rcompile/CRANpkg/local64/2.11/adegenet.Rcheck'
* using R version 2.11.1 Patched (2010-07-29 r52657)
* using session charset: ISO8859-1
* checking for file 'adegenet/DESCRIPTION' ... OK
* this is package 'adegenet' version '1.2-6'
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'adegenet' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking data for non-ASCII characters ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable use of $BLAS_LIBS ... OK
* checking examples ... ERROR
Running examples in 'adegenet-Ex.R' failed.
The error most likely occurred in:

> ### * haploGen
> 
> flush(stderr()); flush(stdout())
> 
> ### Name: haploGen
> ### Title: Simulation of genealogies of haplotypes
> ### Aliases: haploGen print.haploGen [.haploGen labels.haploGen
> ###   as.POSIXct.haploGen seqTrack.haploGen haploGen-class
> ###   as.seqTrack.haploGen plotHaploGen sample.haploGen
> ###   coerce,haploGen,graphNEL-method as,haploGen,graphNEL-method
> 
> ### ** Examples
> 
> if(require(ape)){
+ ## PERFORM SIMULATIONS
+ x <- haploGen(repro=2)
+ x
+ 
+ ## PLOT SPATIAL SPREAD
+ plotHaploGen(x, bg="white")
+ title("Spatial dispersion of the haplotypes")
+ 
+ ## PLOT GENEALOGY
+ if(require(graph) & require(Rgraphviz)){
+ g=as(x, "graphNEL")
+ g
+ renderGraph(layoutGraph(g))
+ }
+ 
+ 
+ ## USE SEQTRACK RECONSTRUCTION
+ x.recons <- seqTrack(x)
+ mean(x.recons$ances==x$ances, na.rm=TRUE) # proportion of correct reconstructions
+ 
+ }
Loading required package: ape
Error in vector("list", n) : invalid 'length' argument
Calls: haploGen ... sapply -> lapply -> as.list -> as.list.DNAbin -> vector
Execution halted