* using log directory 'd:/Rcompile/CRANpkg/local64/2.11/compositions.Rcheck'
* using R version 2.11.1 Patched (2010-07-29 r52657)
* using session charset: ISO8859-1
* checking for file 'compositions/DESCRIPTION' ... OK
* this is package 'compositions' version '1.01-1'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'compositions' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... WARNING
checkRd: (5) mvar.Rd:28: Tag \code is invalid in a \code block
* checking Rd metadata ... WARNING
Rd files with duplicated name 'gsiinternal':
  gsiinternal.Rd gsiplotmargin.Rd
Rd files with duplicated name 'plot3D':
  plot3d.Rd plot3dacomp.Rd plot3daplus.Rd
* checking Rd cross-references ... WARNING
Missing link(s) in documentation object './man/arrows3d.Rd':
  '[rgl]{points3D}'

Missing link(s) in documentation object './man/axis3d.Rd':
  '[rgl]{points3D}'

Missing link(s) in documentation object './man/barplot.Rd':
  '[graphics]{barchart}'

Missing link(s) in documentation object './man/cor.Rd':
  '[base]{cor}'

Missing link(s) in documentation object './man/gsipairs.Rd':
  '[base]{pairs}'

Missing link(s) in documentation object './man/gsitextpanel.Rd':
  '[base]{text}'

Missing link(s) in documentation object './man/meanAcomp.Rd':
  '[robustbase]{covMCD}'

Missing link(s) in documentation object './man/mvar.Rd':
  '[base]{var}' '[base]{cov}'

Missing link(s) in documentation object './man/plot3d.Rd':
  '[rgl]{points3D}'

Missing link(s) in documentation object './man/plot3dacomp.Rd':
  '[rgl]{points3D}'

Missing link(s) in documentation object './man/plot3daplus.Rd':
  '[rgl]{points3D}'

Missing link(s) in documentation object './man/plot3drmult.Rd':
  '[rgl]{points3D}'

Missing link(s) in documentation object './man/plot3drplus.Rd':
  '[rgl]{points3D}'

Missing link(s) in documentation object './man/varAcomp.Rd':
  '[base]{var}' '[base]{cov}'

See the information in section 'Cross-references' of the 'Writing R
Extensions' manual.

* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking data for non-ASCII characters ... OK
* checking examples ... OK
* checking tests ... OK
* checking PDF version of manual ... OK