* using log directory 'd:/Rcompile/CRANpkg/local64/2.11/qtlbim.Rcheck'
* using R version 2.11.1 Patched (2010-07-29 r52657)
* using session charset: ISO8859-1
* checking for file 'qtlbim/DESCRIPTION' ... OK
* this is package 'qtlbim' version '1.9.4'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'qtlbim' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
qb.smoothsame: no visible binding for global variable 'smoothpair'
qb.smoothtwo: multiple local function definitions for 'smoothpair' with
  different formal arguments
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... WARNING
Unknown package(s) 'code' in Rd xrefs
Missing link(s) in documentation object './man/diag.Rd':
  '[base]{boxplot}'

Missing link(s) in documentation object './man/loci.Rd':
  '[graphics]{jitter}' '[base]{plot}'

Missing link(s) in documentation object './man/plot.Rd':
  '[base]{plot}'

Missing link(s) in documentation object './man/qb-internal.Rd':
  '[base]{data}'

See the information in section 'Cross-references' of the 'Writing R
Extensions' manual.

* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking data for non-ASCII characters ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable use of $BLAS_LIBS ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking PDF version of manual ... OK